Wednesday 5 March 2014

Protein Data Bank

Happy Thursday everybody!!

In this session, we have learn about Protein Data Bank or PDB . This is another new interesting topic for us to be explored. Are you ready guys?


Protein Data Bank or PDB is a repository for the three-dimensional (3D) structural data of large biological molecules such as proteins and nucleic acid. All the data in the PDB are available to the public.

The first step to used this PDB is you need to install this software in your computer. You may click this link below to download PDB :)


In order to find the protein structures in web, we need to open this website.


1) Search for the protein that you want to study, for example, Neuraminidase.


2) Scroll down to find the specific structure of protein that you want and click on its name.


3) Then, download the file by choosing PDB File (text).


4) Open the file that has been download to view the image.


Then you can try the others type of proteins. 
 
Bil Type of Proteins
1 ClpP
2 HtrA
3 Trypsin
4 Subtylisin 

We have provide you the image of proteins that we have done. You may click on the links given to view the summary of selected proteins.

1) ClpP- 2ZLO Summary of ClpP

 2) HtrA- 3MH5 Summary of HtrA




3) Trypsin- 1TIE Summary of Trypsin


4) Subtylisin- 2X8J Summary of Subtylisin



Enjoy your day :)








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